BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB038B05SP1|AL430490
(739 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 190 3e-48
>3x_Contig1278
Length = 6932
Score = 190 bits (92), Expect = 3e-48
Identities = 183/221 (82%), Gaps = 3/221 (1%)
Strand = Plus / Plus
Query: 208 gcaaatgcatgcaaaagtcgggtaattaaatagtgattaggkgacagtctwtktcctatt 267
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct: 1 gcaaatgcatgcaaaagtcgggtaattaaatagtgattaggtgacagtctatgtccta-t 59
Query: 268 acgtttatatatttgaygcatgtkggtattctktttattwtgattgkggtaactgagggt 327
|||||||||||||||| ||||| ||||| || | ||| |||||| |||||||||||||
Sbjct: 60 acgtttatatatttgatgcatgagggtatactgatgattatgattggggtaactgagggt 119
Query: 328 gkttgtatatttgggttgtgaatttttttwttagatwaccctctgtntaakcctgtttca 387
| ||| | | | |||||||||||||| || | ||| || ||||| || |||| ||||
Sbjct: 120 ggttgaagactggggttgtgaattttattatgaga-aactctctgataaagcctg-ttca 177
Query: 388 atgtatgtctttctycyttttcctgcgtyyaaawatggtgg 428
||| | | |||||| | ||||| ||||| ||| |||||||
Sbjct: 178 atgaaagactttcttctttttcttgcgtccaaaaatggtgg 218
Score = 163 bits (79), Expect = 4e-40
Identities = 158/198 (79%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 542 gaaggtcgtaaagacawttttgccaacgaagawkwgwcgggkgyttctkttcyatgagnt 601
|||| |||||| |||| |||||||||||| || | ||| |||| ||| ||||| |
Sbjct: 331 gaagttcgtaatgacatttttgccaacgatgaagagacggtgtcttctgttccatgagtt 390
Query: 602 gaagcttcgtyygacaatwgtdtdgtmttathtaagtagkaktccgtmgcrgtaatcmta 661
|||||||||| |||||| || | | |||| ||| || | ||||| || | |||| |
Sbjct: 391 gaagcttcgtctgacaattgttttgacttatcaaagaaggattccgtcgctg-aatccaa 449
Query: 662 tmyataacttacgtatctctccaagctgtataagtgtttgggaatggcatttgtagawaa 721
| | |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 450 ttcagaacttacgtatctctccaagctgtataagtgtgttggaatggcatttgtagataa 509
Query: 722 gttaatggactatcttga 739
| |||||||| |||||||
Sbjct: 510 gctaatggacgatcttga 527
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.43 0.719 1.35
Gapped
Lambda K H
1.43 0.719 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,602
Number of Sequences: 1807
Number of extensions: 12602
Number of successful extensions: 2791
Number of sequences better than 1.0e-20: 1
length of query: 739
length of database: 10,358,551
effective HSP length: 16
effective length of query: 723
effective length of database: 10,329,639
effective search space: 7468328997
effective search space used: 7468328997
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.9 bits)
S1: 11 (23.2 bits)
S2: 48 (99.7 bits)